Pseudomonas koreensis strain LMG 21318

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LMG 21318 is a Gram-negative bacterium that has been isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of its genomic structure. One notable aspect of Pseudomonas koreensis is its association with Homo sapiens, as it has been implicated in cases of infectious keratitis. This health effect indicates that the bacterium can act as a pathogen in humans, highlighting its potential medical significance. The ecological role of Pseudomonas koreensis within its native habitat is likely linked to its interactions within the rice rhizosphere, where it may play a role in nutrient cycling or plant health. The presence of this strain in agricultural soil underscores the complex relationships between soil microbiota and crop ecosystems, suggesting that Pseudomonas koreensis could be a factor in plant growth or soil health management. The strain is cataloged under the accession number NZ_LT629687.1, allowing for further research into its genetic and phenotypic characteristics. Overall, Pseudomonas koreensis strain LMG 21318 exemplifies the dual nature of some soil bacteria, serving both beneficial roles in agriculture and posing risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LMG 21318

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LMG 21318
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LMG 21318 chromosome I.

Gene Summary

Adenine Count

1203591 bp

Thymine Count

1213312 bp

Guanine Count

1856564 bp

Cytosine Count

1850346 bp

Genome Length

6123913 bp

Protein-coding Genes

5313 genes

Non-Coding Genes

296 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis proteinBLS19_RS08665Not AvailablePositive1905006 - 190695268950.3
type ii 3-dehydroquinate dehydrataseBLS19_RS08670Not AvailablePositive1907199 - 190765416588.9
acetyl-coa carboxylase biotin carboxyl carrier proteinBLS19_RS08675Not AvailablePositive1907679 - 190814016222.5
acetyl-coa carboxylase biotin carboxylase subunitBLS19_RS08680Not AvailablePositive1908158 - 190951648958.8
50s ribosomal protein l11 methyltransferaseBLS19_RS08685Not AvailablePositive1909756 - 191063431623.5
duf3426 domain-containing proteinBLS19_RS08690Not AvailablePositive1910665 - 191193947554.8
trna dihydrouridine synthase dusbBLS19_RS08695Not AvailablePositive1912125 - 191313536480.0
dna-binding transcriptional regulator fisBLS19_RS08700Not AvailablePositive1913132 - 191345211692.0
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseBLS19_RS08705Not AvailablePositive1913535 - 191514257441.7
phosphoribosylamine--glycine ligaseBLS19_RS08710Not AvailablePositive1915333 - 191662845355.2

Displaying genes 1901 – 1910 of 5609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total