Pseudomonas koreensis strain LMG 21318

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LMG 21318 is a Gram-negative bacterium that has been isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of its genomic structure. One notable aspect of Pseudomonas koreensis is its association with Homo sapiens, as it has been implicated in cases of infectious keratitis. This health effect indicates that the bacterium can act as a pathogen in humans, highlighting its potential medical significance. The ecological role of Pseudomonas koreensis within its native habitat is likely linked to its interactions within the rice rhizosphere, where it may play a role in nutrient cycling or plant health. The presence of this strain in agricultural soil underscores the complex relationships between soil microbiota and crop ecosystems, suggesting that Pseudomonas koreensis could be a factor in plant growth or soil health management. The strain is cataloged under the accession number NZ_LT629687.1, allowing for further research into its genetic and phenotypic characteristics. Overall, Pseudomonas koreensis strain LMG 21318 exemplifies the dual nature of some soil bacteria, serving both beneficial roles in agriculture and posing risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LMG 21318

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LMG 21318
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LMG 21318 chromosome I.

Gene Summary

Adenine Count

1203591 bp

Thymine Count

1213312 bp

Guanine Count

1856564 bp

Cytosine Count

1850346 bp

Genome Length

6123913 bp

Protein-coding Genes

5313 genes

Non-Coding Genes

296 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter permease subunitBLS19_RS06405Not AvailableNegative1401933 - 1405004112728.0
efflux rnd transporter periplasmic adaptor subunitBLS19_RS06410Not AvailableNegative1405011 - 140611139793.3
tetr/acrr family transcriptional regulatorBLS19_RS06415Not AvailablePositive1406206 - 140684123181.9
class i sam-dependent methyltransferaseBLS19_RS06420Not AvailableNegative1406946 - 140772527932.1
energy transducer tonbBLS19_RS06425Not AvailablePositive1407822 - 140844222925.0
extensin family proteinBLS19_RS06430Not AvailableNegative1408447 - 140913925289.3
isocitrate lyase/pep mutase family proteinBLS19_RS06435Not AvailableNegative1409142 - 140996328821.1
duf72 domain-containing proteinBLS19_RS06440Not AvailableNegative1409993 - 141085332527.8
hypothetical proteinBLS19_RS06445Not AvailableNegative1410853 - 141116111245.3
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabBLS19_RS06450Not AvailableNegative1411437 - 141211123688.4

Displaying genes 1451 – 1460 of 5609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total