Dickeya aquatica strain 174/2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya aquatica strain 174/2 is a rod-shaped bacterium characterized by the presence of flagella, which contributes to its motility. This strain possesses a single replicon, indicating a streamlined genomic organization that may influence its adaptability and reproduction. The strain is cataloged under the accession number NZ_LT615367.1, providing a reference for further genomic studies. The motility conferred by its flagella may play a significant role in the ecological interactions of Dickeya aquatica, potentially facilitating its colonization in aquatic environments. As a member of the Dickeya genus, which is known for its plant pathogenic species, D. aquatica may engage in complex biological interactions within its habitat. The presence of a single replicon suggests a focused evolutionary strategy, likely enabling efficient resource utilization in its ecological niche. This trait may enhance its survival in various environments, including both aquatic and plant-associated habitats. In summary, the motile, rod-shaped morphology of Dickeya aquatica strain 174/2, combined with its genomic structure, suggests an adaptive strategy that could influence its ecological roles, particularly in aquatic ecosystems or as a potential plant-associated bacterium. Understanding these traits can provide insights into the ecological dynamics of this strain and its interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya aquatica
Strainstrain 174/2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya aquatica strain 174/2 chromosome 1, complete sequence.

Gene Summary

Adenine Count

1044421 bp

Thymine Count

1046004 bp

Guanine Count

1202261 bp

Cytosine Count

1208874 bp

Genome Length

4501560 bp

Protein-coding Genes

3727 genes

Non-Coding Genes

375 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radc family proteinDAQ1742_RS00990Not AvailablePositive220224 - 22088924852.2
50s ribosomal protein l28DAQ1742_RS00995Not AvailablePositive221127 - 2213638965.01
50s ribosomal protein l33DAQ1742_RS01000Not AvailablePositive221375 - 2215426373.91
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseDAQ1742_RS01005Not AvailablePositive221615 - 22242429857.9
pantetheine-phosphate adenylyltransferaseDAQ1742_RS01010Not AvailableNegative222444 - 22293217878.7
glycosyltransferase family 2 proteinDAQ1742_RS01015Not AvailableNegative222919 - 22372530798.5
lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferaseDAQ1742_RS01020Not AvailableNegative223725 - 22500247720.4
glycosyltransferaseDAQ1742_RS01025Not AvailableNegative225135 - 22623540726.5
glycosyltransferase family 4 proteinDAQ1742_RS01030Not AvailableNegative226239 - 22736641895.5
putative lipopolysaccharide heptosyltransferase iiiDAQ1742_RS01035Not AvailableNegative227363 - 22843340559.1

Displaying genes 541 – 550 of 4102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.