Shewanella putrefaciens strain NCTC12093

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella putrefaciens strain NCTC12093 is a Gram-negative bacterium primarily found in mangrove soil, particularly within the Sundarbans mangrove ecosystem. This strain is characterized by the presence of flagella, which facilitates its motility in its natural habitat. Notably, it possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in diverse environments. This bacterium has been documented to associate with Phocoena phocoena, commonly known as the harbor porpoise. Such host interactions suggest a potential ecological role within marine environments, possibly influencing the microbial dynamics associated with these marine mammals. The habitat of S. putrefaciens in the Sundarbans mangrove indicates its adaptation to saline and anaerobic conditions often found in such ecosystems. This adaptability highlights its potential importance in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling within mangrove soils. Understanding the ecological roles of bacteria like Shewanella putrefaciens can provide insights into the health and functioning of mangrove ecosystems, which are critical for coastal protection and biodiversity. The accession number for this strain is NZ_LR134303.1, serving as a reference for further genomic studies and investigations into its characteristics and applications in microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella putrefaciens
Strainstrain NCTC12093

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmangrove soil; Sundarbans; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Phocoena phocoena
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella putrefaciens strain NCTC12093 chromosome 1, complete

Gene Summary

Adenine Count

1313613 bp

Thymine Count

1315408 bp

Guanine Count

1215129 bp

Cytosine Count

1205246 bp

Genome Length

5049396 bp

Protein-coding Genes

4275 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dmt family transporterEL161_RS02395Not AvailablePositive541106 - 54195731515.6
yfaz family proteinEL161_RS02400Not AvailableNegative542015 - 54255419547.9
gnat family n-acetyltransferaseEL161_RS02405Not AvailableNegative542718 - 54322718383.3
magnesium transporterEL161_RS02410Not AvailableNegative543256 - 54462650402.6
glutathione peroxidaseEL161_RS02415Not AvailablePositive544774 - 54525917883.5
m1 family metallopeptidaseEL161_RS02420Not AvailableNegative545859 - 54767668674.7
psts family phosphate abc transporter substrate-binding proteinEL161_RS02425Not AvailableNegative548145 - 54911634853.4
phosphate regulon sensor histidine kinase phorEL161_RS02430Not AvailableNegative549343 - 55064148885.6
phosphate regulon transcriptional regulator phobEL161_RS02435Not AvailableNegative550722 - 55141126181.6
porinEL161_RS02440Not AvailableNegative551597 - 55254133780.1

Displaying genes 501 – 510 of 4422 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

98 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da

Displaying 1–10 of 98 metabolites

Health Effects

No health effects information available for this bacterium.