Candidatus Protochlamydia naegleriophila strain KNic

Gram-negative

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Parachlamydiaceae

Genus

Candidatus Protochlamydia

Description

Candidatus Protochlamydia naegleriophila strain KNic is a Gram-negative bacterium characterized by its unique genomic structure, which comprises two replicons. This organism is noteworthy due to its association with the amoeba Naegleria, suggesting a potential ecological role in amoebic environments. The genomic data for this strain is accessible through the following accession numbers: NZ_LN879503.1 and NZ_LN879502.1. The presence of two replicons is significant, as it may indicate a complex evolutionary history or a specific adaptation mechanism to its niche. This trait can influence the bacterium's replication and genetic diversity, which are crucial for its survival and interaction with host organisms. The association with Naegleria may also imply that Candidatus Protochlamydia naegleriophila strain KNic could play a role in the microbial dynamics of freshwater ecosystems, potentially contributing to nutrient cycling or influencing the population dynamics of its amoebic host. Overall, the study of Candidatus Protochlamydia naegleriophila strain KNic offers insights into the interactions between bacteria and amoebae, highlighting the ecological significance of such relationships in freshwater environments. Further research may elucidate the specific functions and impacts of this bacterium within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia naegleriophila
Strainstrain KNic

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protochlamydia naegleriophila strain KNic chromosome

Gene Summary

Adenine Count

823692 bp

Thymine Count

829377 bp

Guanine Count

616499 bp

Cytosine Count

615522 bp

Genome Length

2885090 bp

Protein-coding Genes

2388 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide assembly protein lapbPNK_RS13330Not AvailablePositive956823 - 95784537643.0
bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family proteinPNK_RS03965Not AvailablePositive958121 - 96015776351.0
low molecular weight protein-tyrosine-phosphatasePNK_RS03970Not AvailablePositive960198 - 96067718036.7
4-hydroxy-3-methylbut-2-enyl diphosphate reductasePNK_RS03975Not AvailablePositive960746 - 96168734655.7
outer membrane beta-barrel proteinPNK_RS03980Not AvailablePositive961759 - 96281440386.5
duf721 domain-containing proteinPNK_RS03985Not AvailablePositive963863 - 96420112650.5
dna topoisomerase (atp-hydrolyzing) subunit bPNK_RS03990Not AvailablePositive964238 - 96674593773.3
dna topoisomerase (atp-hydrolyzing) subunit aPNK_RS03995Not AvailablePositive966829 - 96941497450.9
dtmp kinasePNK_RS04000Not AvailablePositive969422 - 97010525326.5
atp-binding proteinPNK_RS04005Not AvailablePositive970102 - 97120841019.6

Displaying genes 791 – 800 of 2593 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.