Candidatus Protochlamydia naegleriophila strain KNic

Gram-negative

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Parachlamydiaceae

Genus

Candidatus Protochlamydia

Description

Candidatus Protochlamydia naegleriophila strain KNic is a Gram-negative bacterium characterized by its unique genomic structure, which comprises two replicons. This organism is noteworthy due to its association with the amoeba Naegleria, suggesting a potential ecological role in amoebic environments. The genomic data for this strain is accessible through the following accession numbers: NZ_LN879503.1 and NZ_LN879502.1. The presence of two replicons is significant, as it may indicate a complex evolutionary history or a specific adaptation mechanism to its niche. This trait can influence the bacterium's replication and genetic diversity, which are crucial for its survival and interaction with host organisms. The association with Naegleria may also imply that Candidatus Protochlamydia naegleriophila strain KNic could play a role in the microbial dynamics of freshwater ecosystems, potentially contributing to nutrient cycling or influencing the population dynamics of its amoebic host. Overall, the study of Candidatus Protochlamydia naegleriophila strain KNic offers insights into the interactions between bacteria and amoebae, highlighting the ecological significance of such relationships in freshwater environments. Further research may elucidate the specific functions and impacts of this bacterium within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia naegleriophila
Strainstrain KNic

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protochlamydia naegleriophila strain KNic chromosome

Gene Summary

Adenine Count

823692 bp

Thymine Count

829377 bp

Guanine Count

616499 bp

Cytosine Count

615522 bp

Genome Length

2885090 bp

Protein-coding Genes

2388 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate/glutamate racemase family proteinPNK_RS08960Not AvailableNegative2131266 - 213192524355.8
cupin domain-containing proteinPNK_RS08965Not AvailableNegative2132303 - 213264413379.5
atp-dependent dna ligasePNK_RS08970Not AvailableNegative2132767 - 213435660548.2
ligase-associated dna damage response exonucleasePNK_RS08975Not AvailableNegative2134360 - 213536137394.7
hypothetical proteinPNK_RS08980Not AvailablePositive2135513 - 21356957094.61
aminoglycoside phosphotransferase family proteinPNK_RS08985Not AvailableNegative2135681 - 213657433683.7
flavin reductase family proteinPNK_RS08990Not AvailablePositive2136797 - 213735721317.3
hit domain-containing proteinPNK_RS13490Not AvailableNegative2137367 - 213815530204.3
hypothetical proteinPNK_RS09000Not AvailableNegative2138130 - 213867220832.6
hypothetical proteinPNK_RS09005Not AvailablePositive2138852 - 213955926832.3

Displaying genes 1801 – 1810 of 2593 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.