Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS04340 | Not Available | Positive | 941409 - 941717 | 11917.1 |
| duf6115 domain-containing protein | SD1D_RS04345 | Not Available | Positive | 941765 - 942361 | 22795.6 |
| hypothetical protein | SD1D_RS04350 | Not Available | Positive | 942339 - 942965 | 23768.7 |
| 30s ribosomal protein s2 | SD1D_RS04355 | Not Available | Positive | 943107 - 943886 | 29072.0 |
| translation elongation factor ts | SD1D_RS04360 | Not Available | Positive | 943988 - 944920 | 34124.9 |
| hypothetical protein | SD1D_RS04365 | Not Available | Positive | 945059 - 946306 | 47973.0 |
| polysaccharide deacetylase family protein | SD1D_RS04370 | Not Available | Positive | 946461 - 947774 | 50094.8 |
| polymer-forming cytoskeletal protein | SD1D_RS04375 | Not Available | Positive | 947797 - 948564 | 27065.5 |
| ump kinase | SD1D_RS04380 | Not Available | Positive | 948659 - 949363 | 25544.0 |
| ribosome recycling factor | SD1D_RS04385 | Not Available | Positive | 949429 - 949983 | 21408.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
