Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-processing protein dpra | SD1D_RS04140 | Not Available | Positive | 903560 - 904690 | 42542.9 |
| type i dna topoisomerase | SD1D_RS04145 | Not Available | Positive | 905002 - 907080 | 78409.2 |
| gtp-sensing pleiotropic transcriptional regulator cody | SD1D_RS04150 | Not Available | Positive | 907348 - 908118 | 28669.6 |
| flagellar basal body rod protein flgb | SD1D_RS04155 | Not Available | Positive | 908303 - 908692 | 14687.2 |
| flagellar basal body rod protein flgc | SD1D_RS04160 | Not Available | Positive | 908711 - 909148 | 15948.8 |
| flagellar hook-basal body complex protein flie | SD1D_RS04165 | Not Available | Positive | 909166 - 909477 | 11482.6 |
| flagellar m-ring protein flif c-terminal domain-containing protein | SD1D_RS04170 | Not Available | Positive | 909612 - 911207 | 59865.9 |
| flagellar motor switch protein flig | SD1D_RS04175 | Not Available | Positive | 911222 - 912238 | 37609.4 |
| flih/sctl family protein | SD1D_RS04180 | Not Available | Positive | 912231 - 913004 | 29040.7 |
| flagellar protein export atpase flii | SD1D_RS04185 | Not Available | Positive | 913055 - 914365 | 48025.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
