Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-e processing peptidase spoiiga | SD1D_RS04090 | Not Available | Positive | 892583 - 893491 | 34792.8 |
| rna polymerase sporulation sigma factor sige | SD1D_RS04095 | Not Available | Positive | 893534 - 894274 | 28184.4 |
| rna polymerase sporulation sigma factor sigg | SD1D_RS04100 | Not Available | Positive | 894426 - 895205 | 29661.9 |
| aconitate hydratase acna | SD1D_RS04105 | Not Available | Positive | 895412 - 898147 | 100813.0 |
| zinc ribbon domain-containing protein | SD1D_RS04110 | Not Available | Positive | 898199 - 898570 | 14169.0 |
| hypothetical protein | SD1D_RS04115 | Not Available | Positive | 898636 - 899298 | 25242.0 |
| transcriptional regulator nrdr | SD1D_RS04120 | Not Available | Negative | 899412 - 899864 | 17574.1 |
| prc-barrel domain-containing protein | SD1D_RS04125 | Not Available | Negative | 900079 - 900336 | 9620.94 |
| family 43 glycosylhydrolase | SD1D_RS04130 | Not Available | Positive | 900467 - 901903 | 54378.2 |
| yifb family mg chelatase-like aaa atpase | SD1D_RS04135 | Not Available | Positive | 902026 - 903558 | 56820.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
