Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | SD1D_RS04040 | Not Available | Positive | 879563 - 880498 | 34920.3 |
| cell division protein ftsl | SD1D_RS04045 | Not Available | Positive | 880546 - 881073 | 20671.5 |
| peptidoglycan d,d-transpeptidase ftsi family protein | SD1D_RS04050 | Not Available | Positive | 881104 - 883116 | 75523.6 |
| penicillin-binding transpeptidase domain-containing protein | SD1D_RS04055 | Not Available | Positive | 883204 - 885150 | 72323.2 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | SD1D_RS04060 | Not Available | Positive | 885288 - 886256 | 35229.7 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | SD1D_RS04065 | Not Available | Positive | 886278 - 887636 | 50719.2 |
| ftsw/roda/spove family cell cycle protein | SD1D_RS04070 | Not Available | Positive | 887654 - 888802 | 42143.1 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SD1D_RS04075 | Not Available | Positive | 888872 - 890152 | 45991.4 |
| cell division protein ftsq/divib | SD1D_RS04080 | Not Available | Positive | 890171 - 890917 | 28664.0 |
| cell division protein ftsz | SD1D_RS04085 | Not Available | Positive | 891134 - 892354 | 43318.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
