Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | SD1D_RS03990 | Not Available | Positive | 869004 - 870353 | 51433.6 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | SD1D_RS03995 | Not Available | Positive | 870379 - 871389 | 38592.6 |
| stp1/irep family pp2c-type ser/thr phosphatase | SD1D_RS04000 | Not Available | Positive | 871492 - 872214 | 26791.9 |
| stk1 family pasta domain-containing ser/thr kinase | SD1D_RS04005 | Not Available | Positive | 872232 - 874394 | 79651.0 |
| ribosome small subunit-dependent gtpase a | SD1D_RS04010 | Not Available | Positive | 874396 - 875277 | 33233.5 |
| ribulose-phosphate 3-epimerase | SD1D_RS04015 | Not Available | Positive | 875330 - 876007 | 24893.3 |
| thiamine diphosphokinase | SD1D_RS04020 | Not Available | Positive | 876000 - 876674 | 25018.3 |
| redox-regulated atpase ychf | SD1D_RS04025 | Not Available | Positive | 876745 - 877839 | 40400.3 |
| prolipoprotein diacylglyceryl transferase | SD1D_RS04030 | Not Available | Positive | 877870 - 878814 | 35768.6 |
| division/cell wall cluster transcriptional repressor mraz | SD1D_RS04035 | Not Available | Positive | 879104 - 879532 | 16307.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
