Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | SD1D_RS03880 | Not Available | Positive | 847615 - 848298 | 25128.0 |
| response regulator transcription factor | SD1D_RS03885 | Not Available | Positive | 848371 - 849066 | 26704.2 |
| sensor histidine kinase | SD1D_RS03890 | Not Available | Positive | 849098 - 850486 | 52557.6 |
| germn domain-containing protein | SD1D_RS03895 | Not Available | Positive | 850610 - 851521 | 34128.1 |
| dna internalization-related competence protein comec/rec2 | SD1D_RS03900 | Not Available | Positive | 851539 - 853884 | 88310.5 |
| radical sam protein | SD1D_RS03905 | Not Available | Positive | 854290 - 855711 | 55345.7 |
| spasm domain-containing protein | SD1D_RS03910 | Not Available | Positive | 855711 - 856919 | 46700.6 |
| abc transporter atp-binding protein | SD1D_RS03915 | Not Available | Positive | 856964 - 857875 | 34732.0 |
| hypothetical protein | SD1D_RS03920 | Not Available | Positive | 857877 - 858578 | 25769.0 |
| hypothetical protein | SD1D_RS03925 | Not Available | Positive | 858639 - 858839 | 6302.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
