Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tape measure protein | SD1D_RS07615 | Not Available | Negative | 1636314 - 1638500 | 77210.5 |
| hypothetical protein | SD1D_RS12835 | Not Available | Negative | 1638528 - 1638719 | 7479.15 |
| hypothetical protein | SD1D_RS07625 | Not Available | Negative | 1638716 - 1639099 | 14459.4 |
| Major tail protein | SD1D_RS07630 | Not Available | Negative | 1639099 - 1639698 | 21335.9 |
| hypothetical protein | SD1D_RS07635 | Not Available | Negative | 1639704 - 1640048 | 12926.2 |
| Head-tail joining protein | SD1D_RS07640 | Not Available | Negative | 1640045 - 1640476 | 15615.0 |
| head-tail adaptor protein | SD1D_RS07645 | Not Available | Negative | 1640493 - 1640828 | 12341.9 |
| Hypothetical protein | SD1D_RS07650 | Not Available | Negative | 1640831 - 1641139 | 11599.6 |
| Putative major capsid protein | SD1D_RS07655 | Not Available | Negative | 1641161 - 1642363 | 44257.5 |
| Putative clp peptidase | SD1D_RS07660 | Not Available | Negative | 1642377 - 1643102 | 26806.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
