Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| restriction endonuclease subunit s | SD1D_RS03735 | Not Available | Positive | 817062 - 818552 | 57357.3 |
| tyrosine-type recombinase/integrase | SD1D_RS03740 | Not Available | Positive | 818845 - 819432 | 23191.2 |
| hypothetical protein | SD1D_RS03745 | Not Available | Negative | 819612 - 820721 | 43882.3 |
| duf6602 domain-containing protein | SD1D_RS03750 | Not Available | Positive | 820978 - 821709 | 28580.1 |
| hypothetical protein | SD1D_RS03755 | Not Available | Positive | 821766 - 822884 | 44159.6 |
| ribonuclease hi | SD1D_RS03760 | Not Available | Positive | 823127 - 824056 | 35616.2 |
| hypothetical protein | SD1D_RS12135 | Not Available | Positive | 824379 - 824543 | 6331.71 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | SD1D_RS03765 | Not Available | Positive | 824718 - 825110 | 15101.2 |
| n-acetylmuramoyl-l-alanine amidase | SD1D_RS03770 | Not Available | Negative | 825632 - 826207 | 21418.4 |
| multiple monosaccharide abc transporter substrate-binding protein | SD1D_RS03775 | Not Available | Positive | 826497 - 827540 | 37704.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
