Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | SD1D_RS03685 | Not Available | Positive | 802476 - 804074 | 63229.9 |
| extracellular solute-binding protein | SD1D_RS03690 | Not Available | Positive | 804249 - 805958 | 65534.6 |
| abc transporter permease | SD1D_RS12645 | Not Available | Positive | 806100 - 807734 | 61304.3 |
| carbohydrate abc transporter permease | SD1D_RS03700 | Not Available | Positive | 807749 - 808651 | 33802.1 |
| histidine phosphatase family protein | SD1D_RS03705 | Not Available | Positive | 808806 - 809390 | 23123.4 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | SD1D_RS03710 | Not Available | Positive | 809362 - 809832 | 17906.2 |
| recombinase family protein | SD1D_RS03715 | Not Available | Positive | 809921 - 812038 | 82769.9 |
| hypothetical protein | SD1D_RS03720 | Not Available | Positive | 812267 - 812689 | 16954.4 |
| ecoai/ftnuii family type i restriction enzme subunit r | SD1D_RS03725 | Not Available | Positive | 813237 - 815618 | 91848.0 |
| class i sam-dependent dna methyltransferase | SD1D_RS03730 | Not Available | Positive | 815638 - 817065 | 55119.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
