Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-sensing transcriptional repressor rex | SD1D_RS03635 | Not Available | Positive | 792172 - 792816 | 24214.5 |
| hypothetical protein | SD1D_RS03640 | Not Available | Positive | 792865 - 793482 | 24289.1 |
| holo-acp synthase | SD1D_RS03645 | Not Available | Positive | 793488 - 793853 | 13509.4 |
| nad(p)h-hydrate dehydratase | SD1D_RS03650 | Not Available | Positive | 793883 - 795391 | 54253.4 |
| alanine racemase | SD1D_RS03655 | Not Available | Positive | 795422 - 796552 | 41953.9 |
| type ii toxin-antitoxin system pemk/mazf family toxin | SD1D_RS03660 | Not Available | Positive | 796647 - 797015 | 13712.9 |
| hemolysin family protein | SD1D_RS03665 | Not Available | Positive | 797043 - 798350 | 49121.5 |
| hypothetical protein | SD1D_RS03670 | Not Available | Negative | 798740 - 799153 | 15136.4 |
| methyl-accepting chemotaxis protein | SD1D_RS03675 | Not Available | Negative | 799189 - 800406 | 44725.5 |
| sensor histidine kinase | SD1D_RS03680 | Not Available | Positive | 800679 - 802463 | 69213.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
