Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | SD1D_RS03585 | Not Available | Positive | 782120 - 783439 | 50002.4 |
| ferredoxin | SD1D_RS03590 | Not Available | Negative | 783533 - 783721 | 6523.61 |
| rubredoxin | SD1D_RS03595 | Not Available | Positive | 783940 - 784101 | 5957.81 |
| thif family adenylyltransferase | SD1D_RS03600 | Not Available | Positive | 784190 - 784960 | 28124.4 |
| hydrolase | SD1D_RS03605 | Not Available | Positive | 785033 - 785602 | 21637.2 |
| duf554 domain-containing protein | SD1D_RS03610 | Not Available | Positive | 785661 - 786401 | 26072.0 |
| 2-isopropylmalate synthase | SD1D_RS03615 | Not Available | Positive | 786576 - 787964 | 53111.8 |
| isocitrate/isopropylmalate family dehydrogenase | SD1D_RS03620 | Not Available | Positive | 788063 - 789229 | 42970.6 |
| gntr family transcriptional regulator | SD1D_RS03625 | Not Available | Positive | 789284 - 789955 | 25695.7 |
| abc-f family atp-binding cassette domain-containing protein | SD1D_RS03630 | Not Available | Negative | 790022 - 791989 | 74755.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
