Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Site-specific recombinase for integration and excision | SD1D_RS07565 | Not Available | Negative | 1625331 - 1626899 | 60250.6 |
| shoct domain-containing protein | SD1D_RS07570 | Not Available | Negative | 1626961 - 1627179 | 8685.45 |
| N-acetylmuramoyl-l-alanine amidase | SD1D_RS12560 | Not Available | Negative | 1627237 - 1628241 | 37639.0 |
| Phage holin | SD1D_RS07580 | Not Available | Negative | 1628238 - 1628657 | 15053.5 |
| Minor tail protein | SD1D_RS07585 | Not Available | Negative | 1628745 - 1631213 | 94143.7 |
| Hypothetical protein | SD1D_RS07590 | Not Available | Negative | 1631210 - 1631785 | 21426.7 |
| 23s ribosomal rna methyltransferase erm | SD1D_RS07595 | Not Available | Positive | 1631993 - 1632781 | 30852.7 |
| Hypothetical protein | SD1D_RS12465 | Not Available | Negative | 1632795 - 1632989 | 7020.47 |
| Tail protein | SD1D_RS07605 | Not Available | Negative | 1633000 - 1635522 | 93361.4 |
| Distal tail protein | SD1D_RS07610 | Not Available | Negative | 1635527 - 1636300 | 28481.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
