Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extracellular solute-binding protein | SD1D_RS03330 | Not Available | Positive | 722057 - 723367 | 47697.8 |
| carbohydrate abc transporter permease | SD1D_RS03335 | Not Available | Positive | 723572 - 724969 | 52327.4 |
| sugar abc transporter permease | SD1D_RS03340 | Not Available | Positive | 724969 - 725826 | 32675.7 |
| alpha-amylase family glycosyl hydrolase | SD1D_RS03345 | Not Available | Positive | 725865 - 727586 | 66621.6 |
| metallophosphoesterase | SD1D_RS03350 | Not Available | Positive | 727872 - 728750 | 32833.2 |
| alpha-glucosidase | SD1D_RS03355 | Not Available | Positive | 728829 - 730700 | 73196.4 |
| cyclase family protein | SD1D_RS03360 | Not Available | Positive | 730807 - 731433 | 24192.3 |
| ribose-5-phosphate isomerase rpia | SD1D_RS03365 | Not Available | Positive | 731941 - 732606 | 24397.8 |
| abc transporter atp-binding protein/permease | SD1D_RS03370 | Not Available | Positive | 732659 - 735421 | 101114.0 |
| hypothetical protein | SD1D_RS03375 | Not Available | Positive | 735724 - 736590 | 33273.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
