Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6054 family protein | SD1D_RS03290 | Not Available | Positive | 710543 - 710887 | 12771.1 |
| hypothetical protein | SD1D_RS12125 | Not Available | Positive | 710927 - 711088 | 6264.37 |
| hypothetical protein | SD1D_RS03295 | Not Available | Positive | 711171 - 711746 | 23193.3 |
| hypothetical protein | SD1D_RS12130 | Not Available | Positive | 711919 - 712068 | 5698.97 |
| methyl-accepting chemotaxis protein | SD1D_RS03300 | Not Available | Negative | 712144 - 713634 | 55424.1 |
| hypothetical protein | SD1D_RS03305 | Not Available | Positive | 713974 - 714300 | 13144.3 |
| endo-1,4-beta-xylanase | SD1D_RS03310 | Not Available | Negative | 714376 - 716499 | 79570.5 |
| laci family dna-binding transcriptional regulator | SD1D_RS03315 | Not Available | Negative | 716752 - 717747 | 36831.5 |
| 4-alpha-glucanotransferase | SD1D_RS03320 | Not Available | Positive | 718100 - 719632 | 59451.7 |
| glycogen/starch/alpha-glucan phosphorylase | SD1D_RS03325 | Not Available | Positive | 719655 - 721991 | 89965.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
