Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase small subunit | SD1D_RS03095 | Not Available | Positive | 664086 - 664595 | 18727.9 |
| ketol-acid reductoisomerase | SD1D_RS03100 | Not Available | Positive | 664630 - 665640 | 36740.2 |
| phosphoenolpyruvate carboxykinase (gtp) | SD1D_RS03105 | Not Available | Positive | 665910 - 667700 | 66456.0 |
| diaminopimelate dehydrogenase | SD1D_RS03110 | Not Available | Positive | 667939 - 668928 | 36716.8 |
| lytic transglycosylase domain-containing protein | SD1D_RS03115 | Not Available | Positive | 668953 - 669675 | 26154.0 |
| ribosomal protection-like abc-f family protein | SD1D_RS03120 | Not Available | Positive | 670041 - 671603 | 60574.0 |
| 2-hydroxyacyl-coa dehydratase | SD1D_RS03125 | Not Available | Positive | 671805 - 676028 | 157179.0 |
| duf3887 domain-containing protein | SD1D_RS03130 | Not Available | Positive | 676322 - 677425 | 41436.0 |
| substrate-binding domain-containing protein | SD1D_RS03135 | Not Available | Positive | 677419 - 677822 | 15328.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | SD1D_RS03140 | Not Available | Negative | 677906 - 679198 | 45999.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
