Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS03000 | Not Available | Positive | 638425 - 641517 | 119178.0 |
| abc transporter substrate-binding protein | SD1D_RS03005 | Not Available | Positive | 641633 - 643060 | 53187.2 |
| carbohydrate abc transporter permease | SD1D_RS03010 | Not Available | Positive | 643231 - 644154 | 34534.5 |
| carbohydrate abc transporter permease | SD1D_RS03015 | Not Available | Positive | 644156 - 644983 | 30140.3 |
| extracellular solute-binding protein | SD1D_RS03020 | Not Available | Positive | 645158 - 646768 | 62238.8 |
| sensor histidine kinase | SD1D_RS03025 | Not Available | Positive | 646772 - 648586 | 70166.8 |
| response regulator | SD1D_RS03030 | Not Available | Positive | 648579 - 650039 | 57351.8 |
| delta-lactam-biosynthetic de-n-acetylase | SD1D_RS03035 | Not Available | Positive | 650182 - 650952 | 29290.7 |
| rhs repeat domain-containing protein | SD1D_RS12305 | Not Available | Positive | 651230 - 651382 | 5733.55 |
| arac family transcriptional regulator | SD1D_RS03045 | Not Available | Negative | 651538 - 652377 | 33017.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
