Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase | SD1D_RS02940 | Not Available | Positive | 623280 - 625358 | 78880.6 |
| glucosamine-6-phosphate deaminase | SD1D_RS02945 | Not Available | Positive | 625558 - 626337 | 29050.8 |
| udp-n-acetylglucosamine pyrophosphorylase | SD1D_RS02950 | Not Available | Positive | 626432 - 627100 | 23796.9 |
| iron-sulfur cluster assembly scaffold protein | SD1D_RS02955 | Not Available | Positive | 627290 - 627982 | 24870.0 |
| gggtgrt protein | SD1D_RS02960 | Not Available | Positive | 628003 - 629013 | 35644.5 |
| fibronectin type iii domain-containing protein | SD1D_RS02965 | Not Available | Positive | 629117 - 629695 | 22112.4 |
| hypothetical protein | SD1D_RS02970 | Not Available | Positive | 630052 - 630240 | 7225.67 |
| duf4274 domain-containing protein | SD1D_RS02975 | Not Available | Positive | 630268 - 630714 | 17395.1 |
| carbohydrate-binding protein | SD1D_RS12390 | Not Available | Negative | 630905 - 635041 | 148750.0 |
| gh36-type glycosyl hydrolase domain-containing protein | SD1D_RS02995 | Not Available | Positive | 635671 - 638370 | 102861.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
