Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Transposase | SD1D_RS07475 | Not Available | Negative | 1598076 - 1599548 | 58089.5 |
| Putative helicase | SD1D_RS07480 | Not Available | Negative | 1599981 - 1601669 | 65105.5 |
| Gp28 | SD1D_RS07485 | Not Available | Negative | 1601654 - 1603702 | 78419.0 |
| Attr | Not Available | Not Available | Positive | 1616997 - 1617012 | Not Available |
| Attl | Not Available | Not Available | Positive | 1616522 - 1616534 | Not Available |
| Reverse transcriptase | SD1D_RS07540 | Not Available | Negative | 1620625 - 1621455 | 31278.6 |
| Portal and muf-like fusion protein | SD1D_RS07545 | Not Available | Negative | 1621433 - 1621843 | 15679.9 |
| Is30 family transposase | SD1D_RS07550 | Not Available | Negative | 1622117 - 1623229 | 44058.4 |
| Putative integrase | SD1D_RS07555 | Not Available | Negative | 1623345 - 1624913 | 60264.2 |
| Integrase | SD1D_RS07560 | Not Available | Negative | 1624876 - 1625367 | 18837.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
