Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol/lipid kinase family protein | SD1D_RS02795 | Not Available | Positive | 589645 - 590553 | 33536.5 |
| pilz domain-containing protein | SD1D_RS02800 | Not Available | Negative | 590738 - 591391 | 24978.5 |
| diaminopimelate epimerase | SD1D_RS02805 | Not Available | Positive | 591566 - 592408 | 31096.5 |
| s66 peptidase family protein | SD1D_RS02810 | Not Available | Positive | 592474 - 593502 | 38876.6 |
| lta synthase family protein | SD1D_RS02815 | Not Available | Positive | 593512 - 595557 | 78482.0 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | SD1D_RS02820 | Not Available | Positive | 595662 - 595949 | 10850.8 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gata | SD1D_RS02825 | Not Available | Positive | 595962 - 597416 | 53437.4 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatb | SD1D_RS02830 | Not Available | Positive | 597456 - 598886 | 54194.9 |
| hypothetical protein | SD1D_RS02835 | Not Available | Negative | 598896 - 600566 | 63931.1 |
| hypothetical protein | SD1D_RS02840 | Not Available | Positive | 600797 - 601030 | 8828.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
