Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1538 domain-containing protein | SD1D_RS02745 | Not Available | Negative | 578133 - 579758 | 58357.4 |
| ig-like domain-containing protein | SD1D_RS02750 | Not Available | Negative | 580057 - 581061 | 35790.0 |
| coth kinase family protein | SD1D_RS02755 | Not Available | Positive | 581342 - 582679 | 52691.8 |
| polyphosphate polymerase domain-containing protein | SD1D_RS02760 | Not Available | Positive | 582697 - 583407 | 28419.3 |
| duf4956 domain-containing protein | SD1D_RS02765 | Not Available | Positive | 583404 - 584072 | 24701.9 |
| helix-turn-helix domain-containing protein | SD1D_RS02770 | Not Available | Negative | 584173 - 584973 | 30865.3 |
| abc transporter permease | SD1D_RS02775 | Not Available | Positive | 585481 - 586260 | 29296.3 |
| carbohydrate abc transporter permease | SD1D_RS02780 | Not Available | Positive | 586277 - 587146 | 32651.0 |
| extracellular solute-binding protein | SD1D_RS02785 | Not Available | Positive | 587238 - 588890 | 61146.1 |
| hsp20/alpha crystallin family protein | SD1D_RS02790 | Not Available | Negative | 588960 - 589400 | 17011.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
