Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-c crispr-associated protein cas5c | SD1D_RS02645 | Not Available | Positive | 552910 - 553653 | 29191.5 |
| type i-c crispr-associated protein cas8c/csd1 | SD1D_RS02650 | Not Available | Positive | 553650 - 555620 | 77016.4 |
| type i-c crispr-associated protein cas7/csd2 | SD1D_RS02655 | Not Available | Positive | 555620 - 556480 | 32115.3 |
| crispr-associated protein cas4 | SD1D_RS02660 | Not Available | Positive | 556467 - 557126 | 26033.8 |
| type i-c crispr-associated endonuclease cas1c | SD1D_RS02665 | Not Available | Positive | 557123 - 558154 | 39907.6 |
| crispr-associated endonuclease cas2 | SD1D_RS02670 | Not Available | Positive | 558163 - 558456 | 11425.0 |
| pqq-dependent sugar dehydrogenase | SD1D_RS02675 | Not Available | Negative | 563408 - 564820 | 53187.3 |
| vanr-abdegln family response regulator transcription factor | SD1D_RS02680 | Not Available | Positive | 565097 - 565798 | 27126.8 |
| vancomycin resistance histidine kinase vans | SD1D_RS02685 | Not Available | Positive | 565785 - 566897 | 43496.0 |
| d-alanine--d-serine ligase vang | SD1D_RS02690 | Not Available | Positive | 567059 - 568111 | 39409.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
