Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS02590 | Not Available | Positive | 543069 - 543761 | 26317.9 |
| hd-gyp domain-containing protein | SD1D_RS02595 | Not Available | Positive | 543902 - 544507 | 22693.7 |
| zinc ribbon domain-containing protein | SD1D_RS02600 | Not Available | Positive | 544811 - 546724 | 72352.9 |
| hypoxanthine phosphoribosyltransferase | SD1D_RS02605 | Not Available | Positive | 546946 - 547485 | 20320.8 |
| hypothetical protein | SD1D_RS02615 | Not Available | Positive | 548001 - 548510 | 18971.6 |
| atp-binding cassette domain-containing protein | SD1D_RS02620 | Not Available | Positive | 548537 - 548878 | 12955.8 |
| atp-binding cassette domain-containing protein | SD1D_RS12800 | Not Available | Positive | 548890 - 549030 | 5329.52 |
| hypothetical protein | SD1D_RS02630 | Not Available | Positive | 549163 - 549525 | 13485.2 |
| histidine phosphatase family protein | SD1D_RS02635 | Not Available | Positive | 549646 - 550173 | 20705.8 |
| crispr-associated helicase/endonuclease cas3 | SD1D_RS02640 | Not Available | Positive | 550341 - 552896 | 99963.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
