Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| act domain-containing protein | SD1D_RS02540 | Not Available | Positive | 534466 - 534912 | 16549.1 |
| cold-shock protein | SD1D_RS02545 | Not Available | Positive | 535002 - 535202 | 7356.55 |
| hypothetical protein | SD1D_RS02550 | Not Available | Negative | 535337 - 535846 | 19351.7 |
| duf4430 domain-containing protein | SD1D_RS02555 | Not Available | Negative | 535848 - 536252 | 15346.4 |
| aldose epimerase family protein | SD1D_RS02560 | Not Available | Positive | 536919 - 537977 | 39171.7 |
| uracil phosphoribosyltransferase | SD1D_RS02565 | Not Available | Negative | 538044 - 538673 | 23035.4 |
| aldehyde dehydrogenase | SD1D_RS02570 | Not Available | Positive | 539251 - 540645 | 52505.7 |
| hypothetical protein | SD1D_RS02575 | Not Available | Positive | 540953 - 541423 | 18817.3 |
| polysaccharide deacetylase family protein | SD1D_RS02580 | Not Available | Positive | 541534 - 542325 | 29798.9 |
| holo-acp synthase | SD1D_RS02585 | Not Available | Positive | 542591 - 542974 | 14333.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
