Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sgnh/gdsl hydrolase family protein | SD1D_RS02440 | Not Available | Positive | 510288 - 510974 | 25750.8 |
| single-stranded-dna-specific exonuclease recj | SD1D_RS02445 | Not Available | Positive | 510988 - 512745 | 66075.7 |
| adenine phosphoribosyltransferase | SD1D_RS02450 | Not Available | Positive | 512925 - 513449 | 19300.7 |
| rela/spot family protein | SD1D_RS02455 | Not Available | Positive | 513522 - 515807 | 86356.1 |
| mbl fold metallo-hydrolase | SD1D_RS02460 | Not Available | Positive | 515839 - 516468 | 23426.2 |
| coproporphyrinogen dehydrogenase hemz | SD1D_RS02465 | Not Available | Positive | 516493 - 517977 | 57205.3 |
| histidine--trna ligase | SD1D_RS02470 | Not Available | Positive | 518071 - 519318 | 47494.4 |
| lysr family transcriptional regulator | SD1D_RS02475 | Not Available | Negative | 519512 - 520480 | 36581.0 |
| abc transporter substrate-binding protein | SD1D_RS02480 | Not Available | Positive | 520756 - 522195 | 54704.9 |
| hypothetical protein | SD1D_RS02485 | Not Available | Positive | 522311 - 522571 | 9960.96 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
