Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | SD1D_RS02390 | Not Available | Positive | 501246 - 502121 | 31701.5 |
| card family transcriptional regulator | SD1D_RS02395 | Not Available | Positive | 502414 - 502926 | 19673.6 |
| polysaccharide deacetylase family protein | SD1D_RS02400 | Not Available | Positive | 503095 - 503757 | 24642.3 |
| n-acetyl-gamma-glutamyl-phosphate reductase | SD1D_RS02405 | Not Available | Positive | 503924 - 504895 | 36104.6 |
| marr family winged helix-turn-helix transcriptional regulator | SD1D_RS02410 | Not Available | Negative | 504973 - 505428 | 17554.7 |
| nitroreductase family protein | SD1D_RS02415 | Not Available | Positive | 505669 - 506265 | 22722.1 |
| methylated-dna--[protein]-cysteine s-methyltransferase | SD1D_RS02420 | Not Available | Positive | 506461 - 506940 | 17889.8 |
| m3 family oligoendopeptidase | SD1D_RS02425 | Not Available | Positive | 506946 - 508700 | 67135.7 |
| ydei/ompd-associated family protein | SD1D_RS02430 | Not Available | Positive | 508831 - 509040 | 7675.3 |
| degv family protein | SD1D_RS02435 | Not Available | Negative | 509126 - 509995 | 32336.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
