Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| substrate-binding domain-containing protein | SD1D_RS02295 | Not Available | Negative | 477705 - 479120 | 52401.8 |
| tigr01906 family membrane protein | SD1D_RS02300 | Not Available | Negative | 479195 - 479869 | 25529.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | SD1D_RS02305 | Not Available | Positive | 480068 - 481621 | 57392.9 |
| cold-shock protein | SD1D_RS02310 | Not Available | Negative | 481787 - 481987 | 7280.63 |
| insulinase family protein | SD1D_RS02315 | Not Available | Positive | 482255 - 485194 | 113359.0 |
| gtpase era | SD1D_RS02320 | Not Available | Positive | 485211 - 486137 | 35243.1 |
| hypothetical protein | SD1D_RS02325 | Not Available | Positive | 486303 - 486497 | 7497.63 |
| dna repair protein reco | SD1D_RS02330 | Not Available | Positive | 486469 - 487182 | 27016.8 |
| hypothetical protein | SD1D_RS02335 | Not Available | Positive | 487276 - 487875 | 22494.1 |
| glycine--trna ligase | SD1D_RS02340 | Not Available | Positive | 487943 - 489331 | 54203.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
