Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium-translocating pyrophosphatase | SD1D_RS02245 | Not Available | Positive | 464879 - 466978 | 72059.5 |
| tetratricopeptide repeat protein | SD1D_RS02250 | Not Available | Positive | 467171 - 468361 | 45757.4 |
| gtpase hflx | SD1D_RS02255 | Not Available | Positive | 468373 - 469629 | 47126.0 |
| ribonucleoside triphosphate reductase | SD1D_RS02260 | Not Available | Positive | 469797 - 472172 | 90303.0 |
| thymidylate synthase | SD1D_RS02265 | Not Available | Positive | 472320 - 473165 | 32946.4 |
| dihydrofolate reductase | SD1D_RS02270 | Not Available | Positive | 473209 - 473703 | 18966.7 |
| branched-chain amino acid aminotransferase | SD1D_RS02275 | Not Available | Positive | 473786 - 474856 | 40393.9 |
| duf6106 family protein | SD1D_RS02280 | Not Available | Positive | 474927 - 475424 | 18837.4 |
| imp dehydrogenase | SD1D_RS02285 | Not Available | Positive | 475624 - 477078 | 52156.4 |
| deoxycytidylate deaminase | SD1D_RS02290 | Not Available | Negative | 477163 - 477642 | 17914.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
