Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | SD1D_RS02195 | Not Available | Positive | 451415 - 452434 | 37256.5 |
| abc transporter atp-binding protein | SD1D_RS02200 | Not Available | Positive | 452434 - 453423 | 37162.3 |
| substrate-binding domain-containing protein | SD1D_RS12730 | Not Available | Positive | 453529 - 454461 | 35219.4 |
| substrate-binding domain-containing protein | SD1D_RS02210 | Not Available | Negative | 454536 - 456674 | 79182.0 |
| hypothetical protein | SD1D_RS02215 | Not Available | Negative | 456918 - 457292 | 13158.5 |
| glycoside hydrolase family 2 protein | SD1D_RS02220 | Not Available | Positive | 457465 - 459270 | 70673.9 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | SD1D_RS02225 | Not Available | Negative | 459365 - 461077 | 62958.0 |
| s8 family peptidase | SD1D_RS02230 | Not Available | Positive | 461260 - 462996 | 63997.1 |
| oadg family transporter subunit | SD1D_RS12250 | Not Available | Negative | 463082 - 463234 | 5433.95 |
| sodium ion-translocating decarboxylase subunit beta | SD1D_RS02240 | Not Available | Negative | 463248 - 464405 | 41295.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
