Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS02090 | Not Available | Negative | 430014 - 430586 | 20818.3 |
| glu/leu/phe/val family dehydrogenase | SD1D_RS02095 | Not Available | Negative | 430680 - 431966 | 47578.0 |
| dna-3-methyladenine glycosylase family protein | SD1D_RS02100 | Not Available | Positive | 432317 - 433144 | 31702.0 |
| hypothetical protein | SD1D_RS02105 | Not Available | Positive | 433272 - 433646 | 14907.2 |
| acyl-coa thioesterase | SD1D_RS02110 | Not Available | Negative | 433675 - 434148 | 17749.4 |
| class ii fructose-1,6-bisphosphate aldolase | SD1D_RS02115 | Not Available | Positive | 434343 - 435284 | 34157.9 |
| trna guanosine(34) transglycosylase tgt | SD1D_RS02120 | Not Available | Positive | 435469 - 436602 | 43005.1 |
| preprotein translocase subunit yajc | SD1D_RS02125 | Not Available | Positive | 436683 - 437015 | 12318.4 |
| dipicolinate synthase subunit b | SD1D_RS02130 | Not Available | Negative | 437067 - 437654 | 21353.9 |
| dipicolinate synthase subunit dpsa | SD1D_RS02135 | Not Available | Negative | 437655 - 438521 | 31078.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
