Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6142 family protein | SD1D_RS01995 | Not Available | Positive | 409120 - 409455 | 12123.6 |
| aminopeptidase | SD1D_RS02000 | Not Available | Positive | 409503 - 411581 | 80343.4 |
| abc transporter atp-binding protein | SD1D_RS02005 | Not Available | Positive | 411592 - 412305 | 25705.2 |
| hypothetical protein | SD1D_RS02010 | Not Available | Positive | 412330 - 413901 | 58881.2 |
| phosphoribosylformylglycinamidine cyclo-ligase | SD1D_RS02015 | Not Available | Positive | 414052 - 415077 | 36670.6 |
| phosphoribosylglycinamide formyltransferase | SD1D_RS02020 | Not Available | Positive | 415071 - 415697 | 22909.8 |
| phosphoribosylamine--glycine ligase | SD1D_RS02025 | Not Available | Positive | 415697 - 416962 | 46144.4 |
| sh3 domain-containing protein | SD1D_RS02030 | Not Available | Positive | 417179 - 419917 | 101320.0 |
| cadherin-like beta sandwich domain-containing protein | SD1D_RS02035 | Not Available | Positive | 420100 - 421320 | 45069.5 |
| gntr family transcriptional regulator | SD1D_RS02040 | Not Available | Positive | 421445 - 421819 | 14285.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
