Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit alpha | SD1D_RS01945 | Not Available | Positive | 395172 - 398660 | 132688.0 |
| 6-phosphofructokinase | SD1D_RS01950 | Not Available | Positive | 398693 - 399661 | 34941.0 |
| abc transporter atp-binding protein | SD1D_RS01955 | Not Available | Positive | 399700 - 401445 | 65775.5 |
| sigma-70 family rna polymerase sigma factor | SD1D_RS01960 | Not Available | Positive | 401701 - 402249 | 21089.2 |
| hypothetical protein | SD1D_RS01965 | Not Available | Positive | 402239 - 403096 | 32350.8 |
| hypothetical protein | SD1D_RS01970 | Not Available | Negative | 403169 - 403444 | 10536.8 |
| duf1622 domain-containing protein | SD1D_RS01975 | Not Available | Positive | 403708 - 404052 | 12915.2 |
| ig-like domain-containing protein | SD1D_RS01980 | Not Available | Positive | 404207 - 406765 | 93264.0 |
| [fe-fe] hydrogenase large subunit c-terminal domain-containing protein | SD1D_RS01985 | Not Available | Negative | 407183 - 408439 | 46585.9 |
| vanz family protein | SD1D_RS01990 | Not Available | Positive | 408611 - 409123 | 20196.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
