Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase ii | SD1D_RS01895 | Not Available | Positive | 383493 - 383969 | 17980.5 |
| atp-dependent zinc metalloprotease ftsh | SD1D_RS01900 | Not Available | Positive | 384190 - 386247 | 76844.9 |
| excinuclease abc subunit uvrc | SD1D_RS01905 | Not Available | Positive | 386404 - 388275 | 72628.7 |
| hpr(ser) kinase/phosphatase | SD1D_RS01910 | Not Available | Positive | 388379 - 389311 | 35169.8 |
| rok family glucokinase | SD1D_RS01915 | Not Available | Positive | 389338 - 390255 | 31999.8 |
| udp-n-acetylmuramate dehydrogenase | SD1D_RS01920 | Not Available | Positive | 390306 - 391229 | 33968.3 |
| rnase adapter rapz | SD1D_RS01925 | Not Available | Positive | 391248 - 392099 | 32409.8 |
| dna-binding protein whia | SD1D_RS01930 | Not Available | Positive | 392127 - 393107 | 36818.8 |
| hpr family phosphocarrier protein | SD1D_RS01935 | Not Available | Positive | 393082 - 393336 | 9231.27 |
| polysaccharide deacetylase family protein | SD1D_RS01940 | Not Available | Positive | 393573 - 394991 | 54195.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
