Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SD1D_RS07375 | Not Available | Negative | 1584353 - 1584739 | 14438.3 |
| Major tail protein | SD1D_RS07380 | Not Available | Negative | 1584744 - 1585343 | 21386.9 |
| Hypothetical protein | SD1D_RS07385 | Not Available | Negative | 1585347 - 1585688 | 12711.1 |
| hk97 gp10 family phage protein | SD1D_RS07390 | Not Available | Negative | 1585685 - 1586116 | 15531.8 |
| head-tail adaptor protein | SD1D_RS07395 | Not Available | Negative | 1586122 - 1586457 | 12384.8 |
| head-tail connector protein | SD1D_RS07400 | Not Available | Negative | 1586459 - 1586779 | 11933.0 |
| Putative phage head fiber protein | SD1D_RS12555 | Not Available | Negative | 1586799 - 1587179 | 12930.1 |
| Putative major capsid protein | SD1D_RS07410 | Not Available | Negative | 1587192 - 1588397 | 43853.9 |
| Putative clp peptidase | SD1D_RS07415 | Not Available | Negative | 1588418 - 1589119 | 25883.3 |
| Putative portal protein | SD1D_RS07420 | Not Available | Negative | 1589116 - 1590363 | 46675.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
