Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l13 | SD1D_RS01745 | Not Available | Positive | 353510 - 353944 | 15865.5 |
| 30s ribosomal protein s9 | SD1D_RS01750 | Not Available | Positive | 353973 - 354365 | 14686.0 |
| hypothetical protein | SD1D_RS01755 | Not Available | Positive | 354593 - 355303 | 26569.0 |
| trm11 family sam-dependent methyltransferase | SD1D_RS01760 | Not Available | Positive | 355602 - 356636 | 39117.8 |
| elongation factor p 5-aminopentanone reductase | SD1D_RS01765 | Not Available | Negative | 356668 - 357417 | 27250.9 |
| hypothetical protein | SD1D_RS01770 | Not Available | Positive | 357546 - 358385 | 31987.5 |
| yitt family protein | SD1D_RS01775 | Not Available | Positive | 358453 - 359337 | 31778.9 |
| abc transporter atp-binding protein | SD1D_RS01780 | Not Available | Positive | 359520 - 360635 | 41945.9 |
| pucr family transcriptional regulator | SD1D_RS01785 | Not Available | Positive | 360885 - 361973 | 41812.6 |
| s41 family peptidase | SD1D_RS01790 | Not Available | Positive | 361993 - 363243 | 46318.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
