Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s13 | SD1D_RS01695 | Not Available | Positive | 345371 - 345739 | 13932.9 |
| 30s ribosomal protein s11 | SD1D_RS01700 | Not Available | Positive | 345774 - 346175 | 14032.0 |
| 30s ribosomal protein s4 | SD1D_RS01705 | Not Available | Positive | 346191 - 346787 | 22515.4 |
| dna-directed rna polymerase subunit alpha | SD1D_RS01710 | Not Available | Positive | 346842 - 347801 | 35368.2 |
| bl17 family ribosomal protein | SD1D_RS01715 | Not Available | Positive | 347837 - 348373 | 20235.8 |
| energy-coupling factor transporter atpase | SD1D_RS01720 | Not Available | Positive | 348560 - 349414 | 31785.6 |
| energy-coupling factor transporter atpase | SD1D_RS01725 | Not Available | Positive | 349454 - 350308 | 31884.7 |
| energy-coupling factor transporter transmembrane component t family protein | SD1D_RS01730 | Not Available | Positive | 350352 - 351173 | 30866.3 |
| trna pseudouridine(38-40) synthase trua | SD1D_RS01735 | Not Available | Positive | 351232 - 351990 | 28483.5 |
| dde-type integrase/transposase/recombinase | SD1D_RS12375 | Not Available | Positive | 352619 - 353224 | 24261.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
