Herbinix luporum strain SD1D

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix luporum strain SD1D is a Gram-positive, non-motile, anaerobic bacterium that thrives in thermophilic conditions, with an optimal growth temperature of 45°C. This strain is notable for its singular replicon, indicating a streamlined genetic structure. Unlike some bacterial species, Herbinix luporum SD1D does not form spores, which could affect its survival strategies in fluctuating environmental conditions. The anaerobic nature of Herbinix luporum suggests that it plays a role in environments devoid of oxygen, potentially contributing to anaerobic processes such as fermentation or decomposition in thermophilic ecosystems. Its optimal temperature range positions it among organisms that can thrive in high-temperature habitats, which are often rich in organic matter and other microbial life. The accession number for this strain is NZ_LN879430.1, which provides a reference for further genetic and functional studies. Understanding the ecological role of Herbinix luporum SD1D may illuminate its contributions to nutrient cycling and energy flow in its native habitats, particularly in anaerobic thermophilic environments. Its metabolic processes could be integral to the breakdown of complex organic materials, thus influencing microbial community dynamics and ecosystem health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix luporum
Strainstrain SD1D

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix luporum strain SD1D chromosome I, complete sequence.

Gene Summary

Adenine Count

845452 bp

Thymine Count

844048 bp

Guanine Count

458713 bp

Cytosine Count

461139 bp

Genome Length

2609352 bp

Protein-coding Genes

2309 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolase family 3 c-terminal domain-containing proteinSD1D_RS01300Not AvailablePositive273381 - 27554079888.8
alpha-glucuronidase family glycosyl hydrolaseSD1D_RS01305Not AvailablePositive275695 - 27771677020.1
mannonate dehydrataseSD1D_RS01310Not AvailablePositive277895 - 27897741448.0
mannitol dehydrogenase family proteinSD1D_RS01315Not AvailablePositive279048 - 28064960459.4
atp-binding cassette domain-containing proteinSD1D_RS01320Not AvailablePositive280801 - 28170933649.6
abc transporter permease subunitSD1D_RS01325Not AvailablePositive281721 - 28254830658.9
duf255 domain-containing proteinSD1D_RS12610Not AvailableNegative282569 - 28290112773.1
duf255 domain-containing proteinSD1D_RS12615Not AvailableNegative282913 - 2830776249.37
lysm peptidoglycan-binding domain-containing proteinSD1D_RS01340Not AvailablePositive283626 - 28494250053.0
thioredoxinSD1D_RS01345Not AvailablePositive285001 - 28531211446.2

Displaying genes 371 – 380 of 2450 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.