Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 3 c-terminal domain-containing protein | SD1D_RS01300 | Not Available | Positive | 273381 - 275540 | 79888.8 |
| alpha-glucuronidase family glycosyl hydrolase | SD1D_RS01305 | Not Available | Positive | 275695 - 277716 | 77020.1 |
| mannonate dehydratase | SD1D_RS01310 | Not Available | Positive | 277895 - 278977 | 41448.0 |
| mannitol dehydrogenase family protein | SD1D_RS01315 | Not Available | Positive | 279048 - 280649 | 60459.4 |
| atp-binding cassette domain-containing protein | SD1D_RS01320 | Not Available | Positive | 280801 - 281709 | 33649.6 |
| abc transporter permease subunit | SD1D_RS01325 | Not Available | Positive | 281721 - 282548 | 30658.9 |
| duf255 domain-containing protein | SD1D_RS12610 | Not Available | Negative | 282569 - 282901 | 12773.1 |
| duf255 domain-containing protein | SD1D_RS12615 | Not Available | Negative | 282913 - 283077 | 6249.37 |
| lysm peptidoglycan-binding domain-containing protein | SD1D_RS01340 | Not Available | Positive | 283626 - 284942 | 50053.0 |
| thioredoxin | SD1D_RS01345 | Not Available | Positive | 285001 - 285312 | 11446.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
