Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c biogenesis protein ccda | SD1D_RS01250 | Not Available | Negative | 258839 - 260149 | 48865.4 |
| helix-turn-helix domain-containing protein | SD1D_RS01255 | Not Available | Negative | 260363 - 261262 | 34995.3 |
| extracellular solute-binding protein | SD1D_RS01260 | Not Available | Positive | 261730 - 264648 | 111033.0 |
| carbohydrate abc transporter permease | SD1D_RS01265 | Not Available | Positive | 264674 - 265612 | 35394.7 |
| carbohydrate abc transporter permease | SD1D_RS01270 | Not Available | Positive | 265665 - 266525 | 32169.6 |
| tetratricopeptide repeat protein | SD1D_RS01275 | Not Available | Positive | 266535 - 268031 | 56683.6 |
| yip1 family protein | SD1D_RS01280 | Not Available | Positive | 268006 - 268668 | 25785.3 |
| duf5696 domain-containing protein | SD1D_RS01285 | Not Available | Positive | 268697 - 271225 | 96387.9 |
| carbohydrate abc transporter permease | SD1D_RS01290 | Not Available | Positive | 271225 - 272157 | 35040.2 |
| carbohydrate abc transporter permease | SD1D_RS01295 | Not Available | Positive | 272150 - 273193 | 39315.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
