Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase family protein | SD1D_RS01200 | Not Available | Positive | 249741 - 250247 | 19388.5 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SD1D_RS01205 | Not Available | Negative | 250363 - 251733 | 50274.3 |
| d-alanine--d-alanine ligase | SD1D_RS01210 | Not Available | Negative | 251748 - 252779 | 37824.3 |
| metallophosphoesterase family protein | SD1D_RS01215 | Not Available | Negative | 252919 - 253860 | 37443.9 |
| duf503 domain-containing protein | SD1D_RS01220 | Not Available | Positive | 254014 - 254295 | 10382.7 |
| methylenetetrahydrofolate reductase | SD1D_RS01225 | Not Available | Positive | 254371 - 255237 | 31950.7 |
| fad:protein fmn transferase | SD1D_RS01230 | Not Available | Negative | 255288 - 256328 | 38690.1 |
| hypothetical protein | SD1D_RS01235 | Not Available | Negative | 256507 - 257517 | 35745.9 |
| spore coat protein | SD1D_RS01240 | Not Available | Negative | 257730 - 258272 | 20480.0 |
| winged helix-turn-helix transcriptional regulator | SD1D_RS01245 | Not Available | Negative | 258357 - 258794 | 16755.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
