Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | SD1D_RS01055 | Not Available | Positive | 220258 - 220944 | 26304.8 |
| recombinase zinc beta ribbon domain-containing protein | SD1D_RS01060 | Not Available | Positive | 221141 - 221725 | 22618.1 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | SD1D_RS01065 | Not Available | Positive | 221824 - 224100 | 86430.9 |
| methylenetetrahydrofolate reductase | SD1D_RS01070 | Not Available | Positive | 224097 - 224960 | 32187.9 |
| lysr family transcriptional regulator | SD1D_RS01075 | Not Available | Negative | 224994 - 225920 | 35379.7 |
| elongation factor p 5-aminopentanone reductase | SD1D_RS01080 | Not Available | Positive | 226079 - 226813 | 26827.5 |
| hypothetical protein | SD1D_RS01085 | Not Available | Positive | 227520 - 228098 | 22392.5 |
| hypothetical protein | SD1D_RS01090 | Not Available | Positive | 228137 - 228592 | 17949.0 |
| tetr/acrr family transcriptional regulator | SD1D_RS01095 | Not Available | Positive | 229599 - 230222 | 23970.9 |
| alpha/beta hydrolase family protein | SD1D_RS01100 | Not Available | Positive | 230287 - 231516 | 46075.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
