Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | SD1D_RS01005 | Not Available | Negative | 206227 - 207639 | 54016.6 |
| response regulator transcription factor | SD1D_RS01010 | Not Available | Negative | 207679 - 208392 | 27533.2 |
| endonuclease muts2 | SD1D_RS01015 | Not Available | Negative | 208417 - 210792 | 88672.3 |
| s1c family serine protease | SD1D_RS01020 | Not Available | Positive | 211065 - 212429 | 50452.1 |
| 3'-5' exoribonuclease yham family protein | SD1D_RS01025 | Not Available | Positive | 212576 - 213529 | 36751.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | SD1D_RS01030 | Not Available | Positive | 213638 - 215014 | 51381.8 |
| group ii intron reverse transcriptase/maturase | SD1D_RS01035 | Not Available | Positive | 215493 - 216791 | 50682.9 |
| helix-turn-helix domain-containing protein | SD1D_RS01040 | Not Available | Positive | 217248 - 217457 | 7889.87 |
| class i sam-dependent dna methyltransferase | SD1D_RS01045 | Not Available | Positive | 217423 - 218397 | 36014.9 |
| is21 family transposase | SD1D_RS01050 | Not Available | Positive | 218788 - 219963 | 45733.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
