Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2156 domain-containing protein | SD1D_RS00955 | Not Available | Negative | 196326 - 197216 | 34810.8 |
| b12-binding domain-containing radical sam protein | SD1D_RS00960 | Not Available | Positive | 197352 - 199097 | 67667.4 |
| endonuclease iii | SD1D_RS00965 | Not Available | Positive | 199153 - 199869 | 27512.4 |
| hypothetical protein | SD1D_RS00970 | Not Available | Negative | 199910 - 200524 | 23650.6 |
| vanw family protein | SD1D_RS00975 | Not Available | Positive | 200840 - 202396 | 58510.8 |
| air synthase family protein | SD1D_RS00980 | Not Available | Positive | 202417 - 203400 | 35732.8 |
| lrp/asnc family transcriptional regulator | SD1D_RS00985 | Not Available | Positive | 203477 - 203959 | 18068.2 |
| pyridoxal phosphate-dependent aminotransferase | SD1D_RS00990 | Not Available | Positive | 203956 - 205116 | 43402.4 |
| chemotaxis protein chex | SD1D_RS00995 | Not Available | Positive | 205175 - 205645 | 17048.1 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | SD1D_RS01000 | Not Available | Positive | 205713 - 206213 | 19207.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
