Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative integrase | SD1D_RS07245 | Not Available | Positive | 1555728 - 1557302 | 60891.0 |
| Transposase | SD1D_RS07250 | Not Available | Positive | 1557505 - 1557966 | 18097.1 |
| hypothetical protein | SD1D_RS07255 | Not Available | Negative | 1558131 - 1559054 | 35109.3 |
| Dna-directed rna polymerase specialized sigma subunit | SD1D_RS07260 | Not Available | Negative | 1559051 - 1559533 | 19005.7 |
| hypothetical protein | SD1D_RS07265 | Not Available | Negative | 1560122 - 1560454 | 12721.8 |
| Site-specific recombinase for integration and excision | SD1D_RS07270 | Not Available | Negative | 1560496 - 1561419 | 34931.6 |
| Attr | Not Available | Not Available | Positive | 1564399 - 1564412 | Not Available |
| Attl | Not Available | Not Available | Positive | 1564348 - 1564363 | Not Available |
| Putative integrase | SD1D_RS07315 | Not Available | Negative | 1568986 - 1570557 | 60294.0 |
| Site-specific recombinase for integration and excision | SD1D_RS07320 | Not Available | Negative | 1570561 - 1570974 | 15800.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
