Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | SD1D_RS00810 | Not Available | Positive | 166787 - 167500 | 26911.5 |
| l-threonylcarbamoyladenylate synthase | SD1D_RS00815 | Not Available | Positive | 167650 - 168705 | 38010.9 |
| low molecular weight protein arginine phosphatase | SD1D_RS12245 | Not Available | Positive | 168728 - 169195 | 17686.2 |
| ribose 5-phosphate isomerase b | SD1D_RS00820 | Not Available | Positive | 169195 - 169626 | 15778.1 |
| ywmb family tata-box binding protein | SD1D_RS00825 | Not Available | Positive | 169654 - 170511 | 32861.7 |
| hypothetical protein | SD1D_RS00830 | Not Available | Negative | 170612 - 171595 | 36767.9 |
| hypothetical protein | SD1D_RS00835 | Not Available | Positive | 171799 - 174351 | 98470.8 |
| aminopeptidase | SD1D_RS00840 | Not Available | Positive | 174430 - 175548 | 42190.2 |
| glycosyltransferase family 2 protein | SD1D_RS00845 | Not Available | Positive | 175565 - 176581 | 39229.9 |
| phosphatase pap2 family protein | SD1D_RS00850 | Not Available | Negative | 176680 - 177375 | 27444.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
