Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methylase | SD1D_RS00710 | Not Available | Positive | 145704 - 147233 | 58171.3 |
| hypothetical protein | SD1D_RS00715 | Not Available | Positive | 147246 - 147650 | 15326.6 |
| had family hydrolase | SD1D_RS00720 | Not Available | Negative | 147672 - 148325 | 24552.3 |
| mgtc/sapb family protein | SD1D_RS00725 | Not Available | Negative | 148370 - 149068 | 26003.9 |
| glycerophosphodiester phosphodiesterase | SD1D_RS00730 | Not Available | Negative | 149115 - 149858 | 28600.9 |
| substrate-binding domain-containing protein | SD1D_RS12785 | Not Available | Negative | 149927 - 150912 | 34105.6 |
| fad-dependent oxidoreductase | SD1D_RS00740 | Not Available | Negative | 150944 - 152317 | 50071.3 |
| laci family dna-binding transcriptional regulator | SD1D_RS00745 | Not Available | Negative | 152416 - 153441 | 37731.3 |
| had hydrolase family protein | SD1D_RS00750 | Not Available | Positive | 153722 - 154075 | 12645.1 |
| xylulokinase | SD1D_RS00755 | Not Available | Positive | 154133 - 155746 | 59521.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
